This repository is under review for potential modification in compliance with Administration directives.
The AMP PD Knowledge Portal was developed to host and share resources related to Parkinson’s disease research and remains fully operational. We continue to maintain and accept Parkinson’s disease and related disorders data and resources throughout this review process.

RNASeq Decision Tree

The following decision tree represents the high-level process performed by the AMP PD Transcriptomics Working Group to process and quality control samples. This diagram illustrates the decision making process for the following: 

  • What tests have been performed
  • For each test
    • What is the pass/fail criteria
    • What is done with failing samples

RNASeq Decision Tree
Source: Decision Tree provided by a member of the AMP PD Transcriptomics Working Group (Ivo Violich at the University of Southern California)